PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04113g16001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 293aa    MW: 32325.9 Da    PI: 8.6049
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04113g16001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.81.1e-3276131258
               ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                               +++rY+eClkNhAas+Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+e++
  Niben101Scf04113g16001.1  76 SRARYRECLKNHAASIGGNVTDGCGEFMPS-GEEGTLEALKCAACNCHRNFHRKEQT 131
                               5789*************************9.999********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.8E-3078130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2279129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.3E-3179129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.96180129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.25E-16223283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-29224286IPR009057Homeodomain-like
TIGRFAMsTIGR015652.5E-28225282IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MALAGEDKEM RMQGSLGYHS LDQNLDQGNH HHHQPNNNNL QPQQDNEKSS SGGGTGAAPL  60
PYSSGGSTNN KFKITSRARY RECLKNHAAS IGGNVTDGCG EFMPSGEEGT LEALKCAACN  120
CHRNFHRKEQ TNVGADNNNA GIMVVHPLQL PQPLPSPLPS MNHHHQHGRS VWSTMPPQPV  180
KMAFGGSGGG GSGATDSSSE ELNFNTYQQA TSVPPQTQPP FMLAKKRFRT KFTQDQKEKM  240
LEFAEKLGWR IPREDDTEVQ RFCSQVGVKR QVFKVWMHNN KNPSAKKNPQ EEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-242262821874ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763792.11e-180PREDICTED: zinc-finger homeodomain protein 5-like
RefseqXP_016490581.11e-180PREDICTED: zinc-finger homeodomain protein 5-like
SwissprotQ9FRL58e-62ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLM0ZWJ41e-122M0ZWJ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000095811e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.18e-60homeobox protein 33